miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|285009723|gb|GT054772.1|GT054772 ATTTGTCTATAAGGAGTAATTTGAAGTAAATTTGTTTATTTCTTATTAAATCTGGAACTAAATTACATCAAATATGGCGA
ACTTTAATAATCCCAACGACTTTTCATGGCAGACTCAAAATAATAGCCAAAATTACTCTTTCAACACCTCTACCAACACA
TTTGCCGATCCAGCGCAAACCCTAGACTTTCAGACCTTTCCAACTGACCAGCAAAACTACTCGTTTGATCAGGGTCAGGG
TACTATGACAGCAAATAACAATCAGTACTACAACTCGAACATATTTACGCCAGCACCAGTACCTGGGGAACCCGTTGCCG
AACCTACAGACTTCGACGAACCGCCACTATTGGACGAACTTGAAATATACCCAGATAGAATACTGGAAAAAACCTTAGCC
GTAATGAATCCATTTCATGGCCAATCAAAAGCAGATGATGCCAACTTTCTACTGAGAGATACAGACATTGCCGGTCCAAT
AGCATTTTGTTTAGCTCTTGCTGTGTGTCTGTTTCTTGCCGGAAACAAAGCTCATTTTGGTTATGTATATGGATTATCTG
TAATGTCAGTAATACTCATGTACTGCTTACTATCTTTGATGAGTCGCACTGAAGGAGTATTTACTCTGTTGAGTGTAGCC
AGTGTACTTGGTTACTGTATGTCACCTATGGTAGTTTTAGCTGGGCTGGGTATATTTATATCCCTTGAAGGATCAGTAGG
TCTAAGCTTATCAGCTATTGCAGTAATTTGGTCAGCTCTGTCTGCTAGCAGACTATTTGTTACTATGTCAGGTGATTCTG
AACAAAGGCCACTGATTGCTTATCCTTGTGCCTTGGTAAATGGAGTATTTGTTCTGTTAGTACTCTTTTGATTTTGAATA
TAATTCTAATGGGAACAAAGTATCAAATTGTCAGTGGTATAAGCTTACTGCCAGACAAATCTTCATCAACAATTTTAAAG
AATCAAAAATATTCCATTTATTTTGTAACCATGTCAAATGTATAGTTTTTAAATGTATTATAAAACAAAAGTACCATCTC




Most similar to sp|Q6P5I8|YIPF5_DANRE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q6P5I8|YIPF5_DANRE Protein YIPF5 OS=Danio rerio GN=yipf5 PE=2
           SV=1
          Length = 257

 Score =  136 bits (343), Expect = 2e-31
 Identities = 76/170 (44%), Positives = 108/170 (63%)
 Frame = +2

Query: 335 DEPPLLDELEIYPDRILEKTLAVMNPFHGQSKADDANFLLRDTDIAGPIXXXXXXXXXXX 514
           DEPPLL+EL I  D I +KTL V++P     KA D + ++ +TD+AGP+           
Sbjct: 88  DEPPLLEELGINFDHIWQKTLTVLHPL----KASDGS-IMNETDLAGPMVFCLAFGATLL 142

Query: 515 XXGNKAHFGYVYGLSVMSVILMYCLLSLMSRTEGVFTLLSVASVLGYCMSPMVVLAGLGI 694
             G K  FGYVYG+S +  + MYCLL+LMS T   F    VASVLGYC+ PM++L+  G+
Sbjct: 143 LTG-KIQFGYVYGISAIGCLGMYCLLNLMSMTGVSFGC--VASVLGYCLLPMIILSSFGV 199

Query: 695 FISLEGSVGLSLSAIAVIWSALSASRLFVTMSGDSEQRPLIAYPCALVNG 844
             SL+G +G+ L+A  + W +LSAS++F++      Q+ L+AYPCAL+ G
Sbjct: 200 IFSLQGIMGIILTAAIIGWCSLSASKIFISALAMDGQQLLVAYPCALLYG 249